Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

Genes Targeted by hsa-mir-590-3p in TU Prostate Lapointe Cluster 39 Table contains all genes in the TU Prostate Lapointe cluster number 39. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-590-3p 9575 CLOCK clock homolog (mouse) [Source:HGNC Symbol;Acc:2082] P T 84844 PHF5A PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] zzz999 283652 SLC24A5 solute carrier family 24, member 5 [Source:HGNC Symbol;Acc:20611] zzz999 54566 EPB41L4B erythrocyte membrane protein band 4.1 like 4B [Source:HGNC Symbol;Acc:19818] P T 8562 DENR density-regulated protein [Source:HGNC Symbol;Acc:2769] P T 79101 TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa [Source:HGNC Symbol;Acc:28759] zzz999 9284 NPIP nuclear pore complex interacting protein [Source:HGNC Symbol;Acc:7909] zzz999 23384 SPECC1L sperm antigen with calponin homology and coiled-coil domains 1-like [Source:HGNC Symbol;Acc:29022] zzz999 25888 ZNF473 zinc finger protein 473 [Source:HGNC Symbol;Acc:23239] zzz999 10181 RBM5 RNA binding motif protein 5 [Source:HGNC Symbol;Acc:9902] zzz999 1739 DLG1 discs, large homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:2900] P T 55775 TDP1 tyrosyl-DNA phosphodiesterase 1 [Source:HGNC Symbol;Acc:18884] T 57835 SLC4A5 solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168] T 153733 CCDC112 coiled-coil domain containing 112 [Source:HGNC Symbol;Acc:28599] zzz999 25814 ATXN10 ataxin 10 [Source:HGNC Symbol;Acc:10549] zzz999 153396 TMEM161B transmembrane protein 161B [Source:HGNC Symbol;Acc:28483] P T 25917 THUMPD3 THUMP domain containing 3 [Source:HGNC Symbol;Acc:24493] T 29766 TMOD3 tropomodulin 3 (ubiquitous) [Source:HGNC Symbol;Acc:11873] T 84679 SLC9A7 solute carrier family 9 (sodium/hydrogen exchanger), member 7 [Source:HGNC Symbol;Acc:17123] zzz999 91057 CCDC34 coiled-coil domain containing 34 [Source:HGNC Symbol;Acc:25079] T 64864 RFX7 regulatory factor X, 7 [Source:HGNC Symbol;Acc:25777] P T 51804 SIX4 SIX homeobox 4 [Source:HGNC Symbol;Acc:10890] T 4218 RAB8A RAB8A, member RAS oncogene family [Source:HGNC Symbol;Acc:7007] zzz999 26999 CYFIP2 cytoplasmic FMR1 interacting protein 2 [Source:HGNC Symbol;Acc:13760] zzz999 51663 ZFR zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277] T 147947 zzz999 zzz999 zzz999 80010 RMI1 RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25764] T 9736 USP34 ubiquitin specific peptidase 34 [Source:HGNC Symbol;Acc:20066] T 60558 GUF1 GUF1 GTPase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25799] T 1452 CSNK1A1 casein kinase 1, alpha 1 [Source:HGNC Symbol;Acc:2451] zzz999 331 XIAP X-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:592] P T 54517 PUS7 pseudouridylate synthase 7 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26033] T 9877 ZC3H11A zinc finger CCCH-type containing 11A [Source:HGNC Symbol;Acc:29093] zzz999 100132476 KRTAP4-7 keratin associated protein 4-7 [Source:HGNC Symbol;Acc:18898] zzz999 10499 NCOA2 nuclear receptor coactivator 2 [Source:HGNC Symbol;Acc:7669] T 51427 ZNF107 zinc finger protein 107 [Source:HGNC Symbol;Acc:12887] T 79675 FASTKD1 FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150] zzz999 85440 DOCK7 dedicator of cytokinesis 7 [Source:HGNC Symbol;Acc:19190] zzz999 3192 HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) [Source:HGNC Symbol;Acc:5048] P T 6595 SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [Source:HGNC Symbol;Acc:11098] P T 94104 GCFC1 GC-rich sequence DNA-binding factor 1 [Source:HGNC Symbol;Acc:13579] T 57786 RBAK RB-associated KRAB zinc finger [Source:HGNC Symbol;Acc:17680] P T 6558 SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 [Source:HGNC Symbol;Acc:10911] P T 85461 TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364] P T 9887 SMG7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:HGNC Symbol;Acc:16792] zzz999 8560 DEGS1 degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) [Source:HGNC Symbol;Acc:13709] T 64062 RBM26 RNA binding motif protein 26 [Source:HGNC Symbol;Acc:20327] zzz999 25832 NBPF14 neuroblastoma breakpoint family, member 14 [Source:HGNC Symbol;Acc:25232] zzz999 11177 BAZ1A bromodomain adjacent to zinc finger domain, 1A [Source:HGNC Symbol;Acc:960] P T 22823 MTF2 metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535] zzz999 5591 PRKDC protein kinase, DNA-activated, catalytic polypeptide [Source:HGNC Symbol;Acc:9413] zzz999 5774 PTPN3 protein tyrosine phosphatase, non-receptor type 3 [Source:HGNC Symbol;Acc:9655] zzz999 5877 RABIF RAB interacting factor [Source:HGNC Symbol;Acc:9797] T 8293 SERF1A small EDRK-rich factor 1A (telomeric) [Source:HGNC Symbol;Acc:10755] T 54880 BCOR BCL6 corepressor [Source:HGNC Symbol;Acc:20893] P T 63898 SH2D4A SH2 domain containing 4A [Source:HGNC Symbol;Acc:26102] zzz999 4430 MYO1B myosin IB [Source:HGNC Symbol;Acc:7596] P T 636 BICD1 bicaudal D homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:1049] zzz999 79884 MAP9 microtubule-associated protein 9 [Source:HGNC Symbol;Acc:26118] T 23365 ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 [Source:HGNC Symbol;Acc:14193] P T 51019 CCDC53 coiled-coil domain containing 53 [Source:HGNC Symbol;Acc:24256] zzz999 11198 SUPT16H suppressor of Ty 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11465] zzz999 92691 TMEM169 transmembrane protein 169 [Source:HGNC Symbol;Acc:25130] T 23215 PRRC2C proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903] zzz999 28982 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 [Source:HGNC Symbol;Acc:24682] zzz999 57649 PHF12 PHD finger protein 12 [Source:HGNC Symbol;Acc:20816] zzz999 6198 RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Source:HGNC Symbol;Acc:10436] P T 153562 MARVELD2 MARVEL domain containing 2 [Source:HGNC Symbol;Acc:26401] zzz999 140710 KIAA0889 KIAA0889 [Source:HGNC Symbol;Acc:16111] zzz999 3133 HLA-E major histocompatibility complex, class I, E [Source:HGNC Symbol;Acc:4962] T 23362 PSD3 pleckstrin and Sec7 domain containing 3 [Source:HGNC Symbol;Acc:19093] P T 55326 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) [Source:HGNC Symbol;Acc:20886] P T 55319 C4orf43 chromosome 4 open reading frame 43 [Source:HGNC Symbol;Acc:25638] P T 1457 CSNK2A1 casein kinase 2, alpha 1 polypeptide [Source:HGNC Symbol;Acc:2457] T 89978 ATPBD4 ATP binding domain 4 [Source:HGNC Symbol;Acc:30543] T 51199 NIN ninein (GSK3B interacting protein) [Source:HGNC Symbol;Acc:14906] T 10146 G3BP1 GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292] P T 9584 RBM39 RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923] P T 10236 HNRNPR heterogeneous nuclear ribonucleoprotein R [Source:HGNC Symbol;Acc:5047] zzz999 1122 CHML choroideremia-like (Rab escort protein 2) [Source:HGNC Symbol;Acc:1941] T

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.